miRBase entry: cpo-mir-494

Stem-loop cpo-mir-494


Accession
MI0038794
Description
Cavia porcellus cpo-mir-494 precursor miRNA


Sequence

AGGUUGUCCGUGUUGUCUUCUCuuuauuuaugaUGAAACAUACACGGGAAACCUCU
(((((.((((((((((.(((((.........)).)))))).))))))).)))))..

Structure
--     G       -   C   -  uuu 
  AGGUU UCCGUGU UGU UUC UC   a
  ||||| ||||||| ||| ||| ||   u
  UCCAA GGGCACA ACA AAG ag   u
UC     A       U   -   U  uau 


Annotation confidence Not enough data
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Genome context
DS562966.1: 1088359-1088414 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from cpo-mir-494
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-494-5p

Accession MIMAT0047289
Description Cavia porcellus cpo-miR-494-5p mature miRNA
Sequence 1 - AGGUUGUCCGUGUUGUCUUCUC - 22
Evidence experimental
Illumina [1]

Mature cpo-miR-494-3p

Accession MIMAT0047290
Description Cavia porcellus cpo-miR-494-3p mature miRNA
Sequence 34 - UGAAACAUACACGGGAAACCUCU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344