miRBase entry: cpo-mir-502a

Stem-loop cpo-mir-502a


Accession
MI0038802
Description
Cavia porcellus cpo-mir-502a precursor miRNA


Sequence

AAUCCUUGCUAUCUGGGUGCUAGUGCugucucaaugcAAUGUACCUGGGCAAGGGUUCA
(((((((((...((((((((...(((.........)))..)))))))))))))))))..

Structure
--         UAU        UAG   ugu 
  AAUCCUUGC   CUGGGUGC   UGC   c
  |||||||||   ||||||||   |||   u
  UUGGGAACG   GGUCCAUG   Acg   c
AC         ---        -UA   uaa 


Annotation confidence Not enough data
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Genome context
DS562987.1: 3014248-3014306 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from cpo-mir-502a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-502a-5p

Accession MIMAT0047305
Description Cavia porcellus cpo-miR-502a-5p mature miRNA
Sequence 1 - AAUCCUUGCUAUCUGGGUGCUAGUGC - 26
Evidence experimental
Illumina [1]

Mature cpo-miR-502a-3p

Accession MIMAT0047306
Description Cavia porcellus cpo-miR-502a-3p mature miRNA
Sequence 38 - AAUGUACCUGGGCAAGGGUUCA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344