miRBase entry: cpo-mir-509b

Stem-loop cpo-mir-509b

Accession

MI0038811

Description

Cavia porcellus cpo-mir-509b precursor miRNA

Sequence

UACUUCACAGAAUCUCGAUCAUGucuaaauaaauaUGAUCGAAUCCUAUGAAGUAGA
(((((((.((.((.((((((((((........)))))))))))).)).)))))))..

Structure

--       C  A  C          cua 
  UACUUCA AG AU UCGAUCAUGu   a
  ||||||| || || ||||||||||    
  AUGAAGU UC UA AGCUAGUaua   a
AG       A  C  -          aau

Annotation confidence Not enough data

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Genome context

DS562939.1: 2748262-2748318 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-509b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-509b-5p

Accession	MIMAT0047323
Description	Cavia porcellus cpo-miR-509b-5p mature miRNA
Sequence	1 - UACUUCACAGAAUCUCGAUCAUG - 23
Evidence	experimental Illumina [1]

Mature cpo-miR-509b-3p

Accession	MIMAT0047324
Description	Cavia porcellus cpo-miR-509b-3p mature miRNA
Sequence	36 - UGAUCGAAUCCUAUGAAGUAGA - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344