Stem-loop cpo-mir-509f

Accession

MI0038816

Description

Cavia porcellus cpo-mir-509f precursor miRNA

Sequence

UUCCCCAACGGCUGUCAAUCAUAgaugauaaaaugUGAUUAACGGCUGUGGGGGAGA
((((((.((((((((.(((((((..........))))))).)))))))).)))))).

Structure

-      A        C       gaug 
 UUCCCC ACGGCUGU AAUCAUA    a
 |||||| |||||||| |||||||     
 GAGGGG UGUCGGCA UUAGUgu    u
A      G        A       aaaa 

Annotation confidence Not enough data

Genome context

DS562939.1: 2722022-2722078 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-509f

Mature cpo-miR-509f-5p

• Accession: MIMAT0047333
• Description: Cavia porcellus cpo-miR-509f-5p mature miRNA
• Sequence: 1 - UUCCCCAACGGCUGUCAAUCAUA - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-509f-3p

• Accession: MIMAT0047334
• Description: Cavia porcellus cpo-miR-509f-3p mature miRNA
• Sequence: 36 - UGAUUAACGGCUGUGGGGGAGA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344