miRBase entry: cpo-mir-539

Stem-loop cpo-mir-539


Accession
MI0038818
Description
Cavia porcellus cpo-mir-539 precursor miRNA


Sequence

GGAGAAAUUAUCCUUGGUGUGUUcacuuuauuuaggaagaauCAUACAAGGACAAUUUCUUUUU
.((((((((.((((((.((((....((((......))))...)))))))))).))))))))...

Structure
--G        A      G    UUca    au 
   GAGAAAUU UCCUUG UGUG    cuuu  u
   |||||||| |||||| ||||    ||||   
   UUCUUUAA AGGAAC AUAC    gaag  u
UUU        C      -    -uaa    ga 


Annotation confidence Not enough data
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Genome context
DS562966.1: 1100599-1100662 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from cpo-mir-539
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-539-5p

Accession MIMAT0047337
Description Cavia porcellus cpo-miR-539-5p mature miRNA
Sequence 1 - GGAGAAAUUAUCCUUGGUGUGUU - 23
Evidence experimental
Illumina [1]

Mature cpo-miR-539-3p

Accession MIMAT0047338
Description Cavia porcellus cpo-miR-539-3p mature miRNA
Sequence 43 - CAUACAAGGACAAUUUCUUUUU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344