miRBase entry: cpo-mir-660

Stem-loop cpo-mir-660


Accession
MI0038832
Description
Cavia porcellus cpo-mir-660 precursor miRNA


Sequence

UACCCAUUGCAUAUCGGAGUUGUgaauucuuaaaauAUCUCCUGUAUGCAUGGAUUAUA
...((((.((((((.((((.(((...........))).)))).))))))))))......

Structure
---UAC    U      C    U   gaau 
      CCAU GCAUAU GGAG UGU    u
      |||| |||||| |||| |||    c
      GGUA CGUAUG CCUC Aua    u
AUAUUA    -      U    U   aaau 


Annotation confidence Not enough data
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Genome context
DS562987.1: 3012570-3012628 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from cpo-mir-660
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-660-5p

Accession MIMAT0047365
Description Cavia porcellus cpo-miR-660-5p mature miRNA
Sequence 1 - UACCCAUUGCAUAUCGGAGUUGU - 23
Evidence experimental
Illumina [1]

Mature cpo-miR-660-3p

Accession MIMAT0047366
Description Cavia porcellus cpo-miR-660-3p mature miRNA
Sequence 37 - AUCUCCUGUAUGCAUGGAUUAUA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344