miRBase entry: cpo-mir-1193

Stem-loop cpo-mir-1193

Accession

MI0038850

Description

Cavia porcellus cpo-mir-1193 precursor miRNA

Sequence

UGGUAGACCGGUGACGUGCACUucauuuacgaUGUAGGUCACCCGUUUCACUAUC
((((((((.((((((.((((..((......)))))).)))))).)))).))))..

Structure

--    -    C      G    CU  au 
  UGGU AGAC GGUGAC UGCA  uc  u
  |||| |||| |||||| ||||  ||   
  AUCA UUUG CCACUG AUGU  ag  u
CU    C    C      G    --  ca

Annotation confidence Not enough data

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Genome context

DS562966.1: 1088694-1088748 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from cpo-mir-1193

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-1193-5p

Accession	MIMAT0047401
Description	Cavia porcellus cpo-miR-1193-5p mature miRNA
Sequence	1 - UGGUAGACCGGUGACGUGCACU - 22
Evidence	not_experimental

Mature cpo-miR-1193-3p

Accession	MIMAT0047402
Description	Cavia porcellus cpo-miR-1193-3p mature miRNA
Sequence	33 - UGUAGGUCACCCGUUUCACUAUC - 55
Evidence	not_experimental

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344