miRBase entry: dno-mir-543

Stem-loop dno-mir-543

Accession

MI0039152

Description

Dasypus novemcinctus dno-mir-543 precursor miRNA

Literature search

1 open access papers mention dno-mir-543
(1 sentences)

Sequence

AAGUUGCCCGUGUUUUUUUCGcuuuauuugugacgAAACAUUCGCGGUGCACUUCUU
((((.(((((((..(.((((((.........).))))).)..))))).))))))...

Structure

---    U  -     UU U     - uuu 
   AAGU GC CCGUG  U UUUCG c   a
   |||| || |||||  | ||||| |   u
   UUCA CG GGCGC  A AAAgc g   u
UUC    -  U     UU C     a ugu

Annotation confidence Not enough data

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Genome context

JH578221.1: 133459-133515 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from dno-mir-543

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dno-miR-543-5p

Accession	MIMAT0047971
Description	Dasypus novemcinctus dno-miR-543-5p mature miRNA
Sequence	1 - AAGUUGCCCGUGUUUUUUUCG - 21
Evidence	experimental Illumina [1]

Mature dno-miR-543-3p

Accession	MIMAT0047972
Description	Dasypus novemcinctus dno-miR-543-3p mature miRNA
Sequence	36 - AAACAUUCGCGGUGCACUUCUU - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344