miRBase entry: ocu-mir-30c-1

Stem-loop ocu-mir-30c-1


Accession
MI0039249
Description
Oryctolagus cuniculus ocu-mir-30c-1 precursor miRNA


Sequence

UGUAAACAUCCUACACUCUCAGCUgugagcucaagguggCUGGGAGAGGGUUGUUUACUCC
.(((((((.(((...(((((((((....(((...)))))))))))).))).)))))))...

Structure
--U       U   ACA         guga   c 
   GUAAACA CCU   CUCUCAGCU    gcu  
   ||||||| |||   |||||||||    ||| a
   CAUUUGU GGG   GAGGGUCgg    ugg  
CCU       U   --A         ----   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000802.1: 125814890-125814950 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-30c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-30c-5p

Accession MIMAT0048154
Description Oryctolagus cuniculus ocu-miR-30c-5p mature miRNA
Sequence 1 - UGUAAACAUCCUACACUCUCAGCU - 24
Evidence experimental
Illumina [1]

Mature ocu-miR-30c-3p

Accession MIMAT0048155
Description Oryctolagus cuniculus ocu-miR-30c-3p mature miRNA
Sequence 40 - CUGGGAGAGGGUUGUUUACUCC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344