miRBase entry: ocu-mir-221

Stem-loop ocu-mir-221

Accession

MI0039357

Description

Oryctolagus cuniculus ocu-mir-221 precursor miRNA

Literature search

2 open access papers mention ocu-mir-221
(3 sentences)

Sequence

ACCUGGCAUACAAUGUAGAUUUCUGUguuuuuugggcaacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....((((((((...)))).))))))))))))).))))))))...

Structure

---        U         AUUU    -    u 
   ACCUGGCA ACAAUGUAG    CUGU guuu  
   |||||||| |||||||||    |||| |||| u
   UGGGUCGU UGUUACAUC    GAca cggg  
CUU        C         ----    a    u

Annotation confidence Not enough data

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Genome context

CM000811.1: 30972910-30972972 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-221

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-221-5p

Accession	MIMAT0048354
Description	Oryctolagus cuniculus ocu-miR-221-5p mature miRNA
Sequence	1 - ACCUGGCAUACAAUGUAGAUUUCUGU - 26
Evidence	experimental Illumina [1]

Mature ocu-miR-221-3p

Accession	MIMAT0048355
Description	Oryctolagus cuniculus ocu-miR-221-3p mature miRNA
Sequence	41 - AGCUACAUUGUCUGCUGGGUUUC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344