miRBase entry: ocu-mir-301b

Stem-loop ocu-mir-301b


Accession
MI0039363
Description
Oryctolagus cuniculus ocu-mir-301b precursor miRNA


Sequence

GCUCUGACGAGGUUGCACUACUgugcucuaagaagCAGUGCAAUGAUAUUGUCAAAGCAU
(((.((((((.((((((((.((...........)).))))))))....)))))).)))..

Structure
--   C      ---G        A  gugc 
  GCU UGACGA    GUUGCACU CU    u
  ||| ||||||    |||||||| ||    c
  CGA ACUGUU    UAACGUGA ga    u
UA   A      AUAG        C  agaa 


Annotation confidence Not enough data
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Genome context
CM000810.1: 5522622-5522681 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-301b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-301b-5p

Accession MIMAT0048366
Description Oryctolagus cuniculus ocu-miR-301b-5p mature miRNA
Sequence 1 - GCUCUGACGAGGUUGCACUACU - 22
Evidence experimental
Illumina [1]

Mature ocu-miR-301b-3p

Accession MIMAT0048367
Description Oryctolagus cuniculus ocu-miR-301b-3p mature miRNA
Sequence 36 - CAGUGCAAUGAUAUUGUCAAAGCAU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344