miRBase entry: ocu-mir-379

Stem-loop ocu-mir-379


Accession
MI0039393
Description
Oryctolagus cuniculus ocu-mir-379 precursor miRNA


Sequence

UGGUAGACUAUGGAACGUAGGcguuaugauuucugaccUAUGUAACAUGGUCCACUAAC
((((.(((((((..(((((((((..........)).)))))))..))))))).))))..

Structure
--    A       GA       -  uuau 
  UGGU GACUAUG  ACGUAGG cg    g
  |||| |||||||  ||||||| ||     
  AUCA CUGGUAC  UGUAUcc gu    a
CA    C       AA       a  cuuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL019048.1: 121687-121745 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ocu-mir-379
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-379-5p

Accession MIMAT0048423
Description Oryctolagus cuniculus ocu-miR-379-5p mature miRNA
Sequence 1 - UGGUAGACUAUGGAACGUAGG - 21
Evidence experimental
Illumina [1]

Mature ocu-miR-379-3p

Accession MIMAT0048424
Description Oryctolagus cuniculus ocu-miR-379-3p mature miRNA
Sequence 39 - UAUGUAACAUGGUCCACUAAC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344