miRBase entry: ocu-mir-487a

Stem-loop ocu-mir-487a

Accession

MI0039418

Description

Oryctolagus cuniculus ocu-mir-487a precursor miRNA

Sequence

GUGGCUAUCCCUGCUGUGUUCGcuguauuugugacgAAUCAUACAGGGACAUCCAGUU
.(((...((((((.(((((((((.........).)))).))))))))))...)))...

Structure

--G   CUA      C    -    - ugu 
   UGG   UCCCUG UGUG UUCG c   a
   |||   |||||| |||| |||| |   u
   ACC   AGGGAC AUAC AAgc g   u
UUG   UAC      -    U    a ugu

Annotation confidence Not enough data

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Genome context

GL019048.1: 141248-141305 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from ocu-mir-487a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-487a-5p

Accession	MIMAT0048471
Description	Oryctolagus cuniculus ocu-miR-487a-5p mature miRNA
Sequence	1 - GUGGCUAUCCCUGCUGUGUUCG - 22
Evidence	experimental Illumina [1]

Mature ocu-miR-487a-3p

Accession	MIMAT0048472
Description	Oryctolagus cuniculus ocu-miR-487a-3p mature miRNA
Sequence	37 - AAUCAUACAGGGACAUCCAGUU - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344