miRBase entry: ocu-mir-500

Stem-loop ocu-mir-500

Accession

MI0039428

Description

Oryctolagus cuniculus ocu-mir-500 precursor miRNA

Sequence

UAAUCCUUGCUACCUGGGUGAGAGUgcuaacugaaugcaAUGCACCUGGGCAAGGAUUCAG
.(((((((((...(((((((....(((.........)))...))))))))))))))))...

Structure

--U         UAC       AGAG   uaa 
   AAUCCUUGC   CUGGGUG    Ugc   c
   |||||||||   |||||||    |||   u
   UUAGGAACG   GGUCCAC    acg   g
GAC         ---       -GUA   uaa

Annotation confidence Not enough data

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Genome context

CM000811.1: 34237519-34237579 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from ocu-mir-500

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-500-5p

Accession	MIMAT0048491
Description	Oryctolagus cuniculus ocu-miR-500-5p mature miRNA
Sequence	1 - UAAUCCUUGCUACCUGGGUGAGAGU - 25
Evidence	experimental Illumina [1]

Mature ocu-miR-500-3p

Accession	MIMAT0048492
Description	Oryctolagus cuniculus ocu-miR-500-3p mature miRNA
Sequence	40 - AUGCACCUGGGCAAGGAUUCAG - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344