miRBase entry: ocu-mir-656

Stem-loop ocu-mir-656


Accession
MI0039457
Description
Oryctolagus cuniculus ocu-mir-656 precursor miRNA


Sequence

AGGUUGCCUGUGAGGUGUUCAcucucuauacgaugAAUAUUAUACAGUCAACCUCU
((((((.(((((.((((((((.((.......)))))))))).))))).))))))..

Structure
--      C     A        c  uc 
  AGGUUG CUGUG GGUGUUCA uc  u
  |||||| ||||| |||||||| ||  a
  UCCAAC GACAU UUAUAAgu ag  u
UC      U     A        -  ca 


Annotation confidence Not enough data
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Genome context
GL019048.1: 153728-153783 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from ocu-mir-656
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-656-5p

Accession MIMAT0048549
Description Oryctolagus cuniculus ocu-miR-656-5p mature miRNA
Sequence 1 - AGGUUGCCUGUGAGGUGUUCA - 21
Evidence experimental
Illumina [1]

Mature ocu-miR-656-3p

Accession MIMAT0048550
Description Oryctolagus cuniculus ocu-miR-656-3p mature miRNA
Sequence 36 - AAUAUUAUACAGUCAACCUCU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344