Stem-loop sequence mmu-mir-1271

Accession

MI0039503 (change log)

Description

Mus musculus miR-1271 stem-loop

Literature search

7 open access papers mention mmu-mir-1271
(28 sentences)

Stem-loop

   a  -   gug    -        c     a       guaag 
5'  cc cag   agug cuuggcac uggua gcacuca     u
    || |||   |||| |||||||| ||||| |||||||      
3'  gg guc   uuac gaaccgug gucau cgugagu     a
   -  a   gug    a        u     c       aguuu 

Deep sequencing

9 reads, 42.9 reads per million, 7 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr13: 54578139-54578221 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0039503

Mature sequence mmu-miR-1271-5p

• Accession: MIMAT0048641
• Sequence: 14 - cuuggcaccugguaagcacuca - 35
• Deep sequencing: 1 reads, 1 experiments
• Evidence: not experimental

Mature sequence mmu-miR-1271-3p

• Accession: MIMAT0048642
• Sequence: 50 - agugccuacugugugccaagaca - 72
• Deep sequencing: 6 reads, 6 experiments
• Evidence: not experimental

References

1. PMID:26473382 "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome" Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ Annu Rev Genet. 49:213-242(2015).