Stem-loop gga-mir-143

Accession

MI0039505

Description

Gallus gallus gga-mir-143 precursor miRNA

Literature search

12 open access papers mention gga-mir-143
(20 sentences)

Sequence

1783803 reads, 53085 reads per million, 5 experiments

ucucccagcccaaGGUGCAGUGCUGCAUCUCUGGucaauugggagucUGAGAUGAAGCACUGUAGCUCGggaagggagga
((((((..(((.((.(((((((((.((((((.((((......)).)).)))))).))))))))).)).)))..)))))).

Structure

-      ag   a  G         G      U  -  aa 
 ucuccc  ccc aG UGCAGUGCU CAUCUC GG uc  u
 ||||||  ||| || ||||||||| |||||| || ||   
 ggaggg  ggG UC AUGUCACGA GUAGAG cu ag  u
a      aa   C  G         A      U  g  gg 

Annotation confidence Medium

Genome context

chr13: 8493098-8493177 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-143

Mature gga-miR-143-5p

• Accession: MIMAT0048645
• Description: Gallus gallus gga-miR-143-5p mature miRNA
• Sequence: 14 - GGUGCAGUGCUGCAUCUCUGG - 34
• Evidence: experimental ; Illumina [2]

Mature gga-miR-143-3p

• Accession: MIMAT0048646
• Description: Gallus gallus gga-miR-143-3p mature miRNA
• Sequence: 48 - UGAGAUGAAGCACUGUAGCUCG - 69
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973


2. PubMed ID: 26473382
   A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
   "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
   "Annu Rev Genet (2015) 49:213-242