miRBase entry: dre-mir-138-2

Stem-loop dre-mir-138-2


Accession
MI0039510
Description
Danio rerio dre-mir-138-2 precursor miRNA

Literature search
4 open access papers mention dre-mir-138-2
(9 sentences)

Sequence

6739 reads, 250 reads per million, 11 experiments
gauggagcaggacAGCUGGUGUUGUGAAUCAGGCCGccguggugaaaggguacgGCUUCUUCACAACACCAGGGUcucacuucauc
(((((((..((((..(((((((((((((..((((((((.(......).))..)))))).))))))))))))).))))..)))))))

Structure
       ca    AG             UC      --  g gg 
gauggag  ggac  CUGGUGUUGUGAA  AGGCCG  cc u  u
|||||||  ||||  |||||||||||||  ||||||  || |   
cuacuuc  ucUG  GACCACAACACUU  UUCGgc  gg a  g
       ac    -G             -C      au  g aa 


Annotation confidence High
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Genome context
chr16: 7836257-7836342 [-]

Database links

Mature dre-miR-138-5p

Accession MIMAT0001835
Description Danio rerio dre-miR-138-5p mature miRNA
Sequence 14 - AGCUGGUGUUGUGAAUCAGGCCG - 36
Evidence experimental
cloned [1]

Mature dre-miR-138-2-3p

Accession MIMAT0048652
Description Danio rerio dre-miR-138-2-3p mature miRNA
Sequence 55 - GCUUCUUCACAACACCAGGGU - 75
Evidence not_experimental

References

  1. PubMed ID: 26473382
    A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
    "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
    "Annu Rev Genet (2015) 49:213-242