miRBase entry: dre-mir-181a-3

Stem-loop dre-mir-181a-3


Accession
MI0039512
Description
Danio rerio dre-mir-181a-3 precursor miRNA

Literature search
18 open access papers mention dre-mir-181a-3
(68 sentences)

Sequence

775721 reads, 50834 reads per million, 11 experiments
gcgagucucagagAACAUUCAACGCUGUCGGUGAGUuugcaagugagaaaaACCAUCGAGUGUUGAGUGUACCcugccucucga
.((((...(((.(.(((((((((((..((((((.((((...........))))))))))))))))))))).).)))...)))).

Structure
g    ucu   a A           UG      A    gcaa 
 cgag   cag g ACAUUCAACGC  UCGGUG GUuu    g
 ||||   ||| | |||||||||||  |||||| ||||    u
 gcuc   guc C UGUGAGUUGUG  AGCUAC CAaa    g
a    ucc   C A           --      -    aaga 


Annotation confidence High
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Genome context
chr3: 34197447-34197530 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-181a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-181a-5p

Accession MIMAT0001623
Description Danio rerio dre-miR-181a-5p mature miRNA
Sequence 14 - AACAUUCAACGCUGUCGGUGAGU - 36
Evidence not_experimental

Mature dre-miR-181a-3-3p

Accession MIMAT0048654
Description Danio rerio dre-miR-181a-3-3p mature miRNA
Sequence 52 - ACCAUCGAGUGUUGAGUGUACC - 73
Evidence not_experimental

References

  1. PubMed ID: 26473382
    A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
    "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
    "Annu Rev Genet (2015) 49:213-242