miRBase entry: dre-mir-181b-3

Stem-loop dre-mir-181b-3


Accession
MI0039514
Description
Danio rerio dre-mir-181b-3 precursor miRNA

Literature search
12 open access papers mention dre-mir-181b-3
(42 sentences)

Sequence

70729 reads, 4550 reads per million, 11 experiments
aaaggucacaaucAACAUUCAUUGCUGUCGGUGGGuuggauuguaaaagaaagCUCACUGAACAAUGAAUGCAAcugugucccag
...((.((((.....(((((((((...((((((((((...((....))...)))))))))).)))))))))....)))).))...

Structure
aaa  u    aucAA         CUG          gga  g 
   gg caca     CAUUCAUUG   UCGGUGGGuu   uu u
   || ||||     |||||||||   ||||||||||   ||  
   cc gugu     GUAAGUAAC   AGUCACUCga   aa a
gac  u    -cAAC         --A          aag  a 


Annotation confidence High
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Genome context
chr22: 22825793-22825877 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-181b-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-181b-5p

Accession MIMAT0001270
Description Danio rerio dre-miR-181b-5p mature miRNA
Sequence 14 - AACAUUCAUUGCUGUCGGUGGG - 35
Evidence experimental
cloned [1-2]

Mature dre-miR-181b-3-3p

Accession MIMAT0048656
Description Danio rerio dre-miR-181b-3-3p mature miRNA
Sequence 54 - CUCACUGAACAAUGAAUGCAA - 74
Evidence not_experimental

References

  1. PubMed ID: 26473382
    A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
    "Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ"
    "Annu Rev Genet (2015) 49:213-242