Stem-loop sequence dre-mir-181b-3

Accession

MI0039514 (change log)

Description

Danio rerio miR-181b-3 stem-loop

Literature search

12 open access papers mention dre-mir-181b-3
(42 sentences)

Stem-loop

   aaa  u    aucaa         cug          gga  g 
5'    gg caca     cauucauug   ucgguggguu   uu u
      || ||||     |||||||||   ||||||||||   ||  
3'    cc gugu     guaaguaac   agucacucga   aa a
   gac  u    -caac         --a          aag  a 

Deep sequencing

99133 reads, 5.76e+03 reads per million, 11 experiments

Confidence

Annotation confidence: undefined

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr22: 22825793-22825877 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-181b-3

• dre-mir-181a-1: chr22: 22826004-22826087 [-]
• dre-mir-181b-3: chr22: 22825793-22825877 [-]

Database links

• miRBase Tracker:MI0039514

Mature sequence dre-miR-181b-5p

• Accession: MIMAT0001270
• Previous IDs: dre-miR-181b
• Sequence: 14 - aacauucauugcugucgguggg - 35
• Deep sequencing: 297640 reads, 11 experiments
• Evidence: experimental; cloned [1-2]

Mature sequence dre-miR-181b-3-3p

• Accession: MIMAT0048656
• Sequence: 54 - cucacugaacaaugaaugcaa - 74
• Deep sequencing: 202 reads, 9 experiments
• Evidence: not experimental

References

1. PMID:26473382 "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome" Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ Annu Rev Genet. 49:213-242(2015).