Stem-loop sequence dre-mir-204-3

Accession

MI0039516 (change log)

Description

Danio rerio miR-204-3 stem-loop

Literature search

4 open access papers mention dre-mir-204-3
(18 sentences)

Stem-loop

        cug               ca    a     agagu 
5' gugac   uggguuucccuuugu  uccu ugccu     u
   |||||   |||||||||||||||  |||| |||||     u
3' cacug   acucggagggaaacg  aggg acgga     g
        ccg               ac    -     auagu 

Deep sequencing

142251 reads, 8.47e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr25: 34590792-34590873 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0039516

Mature sequence dre-miR-204-5p

• Accession: MIMAT0001279
• Previous IDs: dre-miR-204
• Sequence: 14 - uucccuuugucauccuaugccu - 35
• Deep sequencing: 340914 reads, 11 experiments
• Evidence: experimental; cloned [1]

Mature sequence dre-miR-204-3-3p

• Accession: MIMAT0048659
• Sequence: 51 - gcagggacagcaaagggaggc - 71
• Deep sequencing: 544 reads, 11 experiments
• Evidence: not experimental

References

1. PMID:26473382 "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome" Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ Annu Rev Genet. 49:213-242(2015).