miRBase entry: csi-MIR167e

Stem-loop csi-MIR167e


Accession
MI0039636
Description
Citrus sinensis csi-MIR167e precursor miRNA

Literature search
4 open access papers mention csi-MIR167e
(5 sentences)

Sequence

ugcacacaagcagucuacaaggggaaaaagUGAAGCUGCCAGCAUGAUCUAucuagcgcauuugguuagugaaaguaauaaauaaagaagcaaguacgauacuaacccuagcuaGGUCAUGCUCUGACAGCCUCACUccuuccuacuugcggacccauuuaauucaa
(((......)))((((.(((((((((..(((((.(((((.(((((((((((.((((.......((((((((...(((.................)))..)))))))))))).)))))))))))..).)))).)))))..))))).)))).)))).............

Structure
-ugcacacaagca    a    -     aa     A    - -C           u    cgcauuu        aaa   auaaaua 
             gucu caag gggaa  agUGA GCUG C  AGCAUGAUCUA cuag       gguuagug   gua       a
             |||| |||| |||||  ||||| |||| |  ||||||||||| ||||       ||||||||   |||       a
             cagg guuc uccuu  UCACU CGAC G  UCGUACUGGau gauc       ccaaucau   cau       g
aacuuaauuuacc    c    a     cc     C    A UC           c    -------        -ag   gaacgaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr5: 32495360-32495526 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from csi-MIR167e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csi-miR167e-5p

Accession MIMAT0048886
Description Citrus sinensis csi-miR167e-5p mature miRNA
Sequence 31 - UGAAGCUGCCAGCAUGAUCUA - 51
Evidence experimental
Illumina [1]

Mature csi-miR167e-3p

Accession MIMAT0048887
Description Citrus sinensis csi-miR167e-3p mature miRNA
Sequence 115 - GGUCAUGCUCUGACAGCCUCACU - 137
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113