miRBase entry: csi-MIR169g

Stem-loop csi-MIR169g


Accession
MI0039642
Description
Citrus sinensis csi-MIR169g precursor miRNA

Literature search
5 open access papers mention csi-MIR169g
(12 sentences)

Sequence

ucuugcauguggagaugaaaugaugcggugCAGCCAAGGAUGACUUGCCGGcaagccccuuuccuagaaccuaagcaucauauuuuuagauggcuucacaauuaugagucuuuugacuugggguuugauuuuauagcuucacuuguaggguuaaucggcaaguugucuuuggcuacaccucugccucauguucacauguuagaccu
(((.(((((((((.((((......(.((((.((((((((((((((((((((((((((((.............(((((((.((....))))).)))).........(((((....)))))))))))))(((((((((......)))))))))...)))))))))))))))))))).)))).)....)))).))))))))).)))...

Structure
---   u         g    aaugau c    C                    ---------------------------        ----------uuuccuagaaccu    -   a  u 
   ucu gcaugugga auga      g ggug AGCCAAGGAUGACUUGCCGG                           caagcccc                       aagc auc ua u
   ||| ||||||||| ||||      | |||| ||||||||||||||||||||                           ||||||||                       |||| ||| ||  
   aga uguacacuu uacu      c ccac ucgguuucuguugaacggcu                           guuugggg                       uucg uag au u
ucc   u         g    --ccgu u    a                    aauugggauguucacuucgauauuuua        uucaguuuucugaguauuaacac    g   -  u 


Annotation confidence Not enough data
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Genome context
chr7: 1615803-1616008 [-]

Database links

Mature csi-miR169g-5p

Accession MIMAT0048896
Description Citrus sinensis csi-miR169g-5p mature miRNA
Sequence 31 - CAGCCAAGGAUGACUUGCCGG - 51
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113