miRBase entry: csi-MIR169l

Stem-loop csi-MIR169l


Accession
MI0039647
Description
Citrus sinensis csi-MIR169l precursor miRNA

Literature search
5 open access papers mention csi-MIR169l
(12 sentences)

Sequence

ucuaacaugaagaaaagagugcuaguuuggUAGCCAAGGAUGACUUGCCUgaucucuccuaagugguuucaaaacguugaauauuuaaacccucggguggguaccAGGCAGUCUCCUUGGCUAACuugacagccucucuucuuucaugguagccc
.(((.(((((((((.((((.(((.(((.((((((((((((.((((.(((((..(((.(((.((.((((((((....)))).......)))))).))).)))...)))))))))))))))))).))).)))))))))).))).)))))).)))...

Structure
--u   a      -   a    u   a   u   -         U    U     -au   u   a  u    -------    a 
   cua caugaa gaa agag gcu guu ggU AGCCAAGGA GACU GCCUg   cuc ccu ag gguu       ucaa a
   ||| |||||| ||| |||| ||| ||| ||| ||||||||| |||| |||||   ||| ||| || ||||       ||||  
   gau guacuu cuu ucuc cga cag uCA UCGGUUCCU CUGA CGGAc   ggg ggg uc ccaa       aguu c
ccc   g      u   c    -   -   u   A         -    -     cau   u   c  -    auuuaua    g 


Annotation confidence Not enough data
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Genome context
chr2: 10938344-10938498 [+]

Database links

Mature csi-miR169l-5p

Accession MIMAT0048901
Description Citrus sinensis csi-miR169l-5p mature miRNA
Sequence 31 - UAGCCAAGGAUGACUUGCCU - 50
Evidence experimental
Illumina [1]

Mature csi-miR169l-3p

Accession MIMAT0048902
Description Citrus sinensis csi-miR169l-3p mature miRNA
Sequence 106 - AGGCAGUCUCCUUGGCUAAC - 125
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113