miRBase entry: csi-MIR171h

Stem-loop csi-MIR171h


Accession
MI0039655
Description
Citrus sinensis csi-MIR171h precursor miRNA

Literature search
4 open access papers mention csi-MIR171h
(4 sentences)

Sequence

ggaguaaaguuugauguuggcauagcucaauccgaucaaaauucucagugcagcugaguccuuuauucUGAUUGAGCCGUGCCAAUAUCacauucauuc
.((((..(((.((((((((((((.((((((((.((..(((...((((((...))))))...)))..)).)))))))).)))))))))))).))).))))

Structure
g    aa   u            a        c  uc   auu      g 
 gagu  agu ugauguuggcau gcucaauc ga  aaa   cucagu  
 ||||  ||| |||||||||||| |||||||| ||  |||   |||||| c
 cuua  uua aCUAUAACCGUG CGAGUUAG cu  uuu   gagucg  
-    -c   c            C        U  ua   ccu      a 


Annotation confidence Not enough data
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Genome context
chr2: 24735623-24735721 [+]

Database links

Mature csi-miR171h-3p

Accession MIMAT0048913
Description Citrus sinensis csi-miR171h-3p mature miRNA
Sequence 69 - UGAUUGAGCCGUGCCAAUAUC - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113