miRBase entry: csi-MIR393b

Stem-loop csi-MIR393b


Accession
MI0039660
Description
Citrus sinensis csi-MIR393b precursor miRNA

Literature search
2 open access papers mention csi-MIR393b
(9 sentences)

Sequence

ugagaguucuugauuagugcagguggagagUUCCAAAGGGAUCGCAUUGAUCugaugauaacauuaaauuaaucacucaaacggguugauuuuauuauauauaugauuucuuucauuuuuagaUCAUGCGAUCCCUUCGGAAUUccccaucuauggcucuaaauuuuuauauau
((((((((......(((.((((((((.(((((((.((((((((((((.(((((((((((((.....((((((((.(......))))))))))))))))....((((......))))...)))))))))))))))))).))))))).))))))...)).))))))))))).....

Structure
-----        cuugau   u  ---      a       A            U      ---------------------       cauua        a uc 
     ugagaguu      uag gc   aggugg gagUUCC AAGGGAUCGCAU GAUCug                     augauaa     aauuaauc c  a
     ||||||||      ||| ||   |||||| ||||||| |||||||||||| ||||||                     |||||||     |||||||| |   
     auuuuuaa      auc cg   ucuacc cUUAAGG UUCCCUAGCGUA CUagau                     uauuauu     uuaguugg g  a
uauau        ------   u  gua      c       C            -      uuuuacuuucuuuaguauaua       -----        - ca 


Annotation confidence Not enough data
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Genome context
chr9: 16703306-16703479 [-]

Database links

Mature csi-miR393b-5p

Accession MIMAT0048919
Description Citrus sinensis csi-miR393b-5p mature miRNA
Sequence 31 - UUCCAAAGGGAUCGCAUUGAUC - 52
Evidence experimental
Illumina [1]

Mature csi-miR393b-3p

Accession MIMAT0048920
Description Citrus sinensis csi-miR393b-3p mature miRNA
Sequence 124 - UCAUGCGAUCCCUUCGGAAUU - 144
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113