miRBase entry: csi-MIR396f

Stem-loop csi-MIR396f

Accession

MI0039667

Description

Citrus sinensis csi-MIR396f precursor miRNA

Literature search

1 open access papers mention csi-MIR396f
(2 sentences)

Sequence

cauuauuauuauuaaguccuggucaugcuuUUCCACAGCUUUCUUGAACUUccacuguuugcugauuaauacacggcucuugcuagcuaggcgccguauguagacaccgcgcgccaugggaGCUCAAGAAAGCUGUGGGAGAacauggcacaccuucaggauuugccugcuc
............(((((((((((((((.(((((((((((((((((((.((((((..((.(((((.((.(((.(((((.((((.....)))).))))).))).))))..))).))..)))))).))))))))))))))))))).)))))).......))))))))).......

Structure

cauuauuauuau         -------      c                   A      cu  u   --  a  a   c     u    c 
            uaaguccug       gucaug uuUUCCACAGCUUUCUUGA CUUcca  gu ugc  ug uu aua acggc cuug u
            |||||||||       |||||| ||||||||||||||||||| ||||||  || |||  || || ||| ||||| |||| a
            guuuaggac       cgguac AGAGGGUGUCGAAAGAACU Gagggu  cg gcg  ac ag ugu ugccg ggau g
-----cucgucc         uuccaca      a                   C      ac  c   cc  -  a   a     c    c

Annotation confidence Not enough data

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Genome context

chr4: 3340888-3341059 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR396f

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature csi-miR396f-5p

Accession	MIMAT0048930
Description	Citrus sinensis csi-miR396f-5p mature miRNA
Sequence	31 - UUCCACAGCUUUCUUGAACUU - 51
Evidence	experimental Illumina [1]

Mature csi-miR396f-3p

Accession	MIMAT0048931
Description	Citrus sinensis csi-miR396f-3p mature miRNA
Sequence	122 - GCUCAAGAAAGCUGUGGGAGA - 142
Evidence	experimental Illumina [1]

References

PubMed ID: 28054378
MicroRNA annotation of plant genomes - Do it right or not at all
"Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
Bioessays (2017) 39:1600113