Stem-loop csi-MIR399f

Accession

MI0039670

Description

Citrus sinensis csi-MIR399f precursor miRNA

Literature search

4 open access papers mention csi-MIR399f
(12 sentences)

Sequence

uucugcgggccgcggguagaggagaauuccaGGGCAAUUCUCCUUUGGCAGAaaauauugcgcuuguacguacacgcacggugcaguacuugcacaggugcuauaauauauaauauuugcCGCCAAAGGAGAAUUGCCCUGccauucaacuacuaccauauguaugcauac
...((((.((....(((((((..((((..((((((((((((((((((((.(.(((((((((((((((..((((..(((...))).))))....))))))))..........))))))).).))))))))))))))))))))..))))..)).)))))....)).))))...

Structure

uuc    g  cgcg     -  ga    uc                    A A       ----------        --ac    ac   c 
   ugcg gc    gguag ag  gaau  caGGGCAAUUCUCCUUUGGC G aaauauu          gcgcuugu    guac  gca  
   |||| ||    ||||| ||  ||||  |||||||||||||||||||| | |||||||          ||||||||    ||||  ||| g
   acgu ug    ccauc uc  cuua  GUCCCGUUAAGAGGAAACCG c uuuauaa          cguggaca    caug  cgu  
cau    a  uaua     a  aa    cc                    C g       uauauaauau        cguu    -a   g 

Annotation confidence Not enough data

Genome context

chr2: 2298474-2298644 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from csi-MIR399f

Mature csi-miR399f-5p

• Accession: MIMAT0048935
• Description: Citrus sinensis csi-miR399f-5p mature miRNA
• Sequence: 32 - GGGCAAUUCUCCUUUGGCAGA - 52
• Evidence: experimental ; Illumina [1]

Mature csi-miR399f-3p

• Accession: MIMAT0048936
• Description: Citrus sinensis csi-miR399f-3p mature miRNA
• Sequence: 121 - CGCCAAAGGAGAAUUGCCCUG - 141
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113