Stem-loop csi-MIR2275b

Accession

MI0039679

Description

Citrus sinensis csi-MIR2275b precursor miRNA

Sequence

ccauuugcauuucuuuauuaguuguauguaAGAAUUGGAUGGAACUAAACAgauuaacuacuaaauaguaagaucgaaauauucuuuuucugUUUAGUUUCCUCCAAUAUCUUAucuccaacuucuaaacuauacaacgcaaaaauaaaguucuaaguaauuggaggaccaaaacagacauguc
(((.((((....(((((((.(((((((((((((((((((.(((((((((((((...((((.....))))((((.........))))..))))))))))))).)))))).))))))................))))))).....)))))))......)))).))).........(((....))).

Structure

--------------------   u    --auuu       ----a       ----------------      -      U             ----------------uua    c 
                    cca uugc      cuuuauu     guuguau                guaAGA AUUGGA GGAACUAAACAga                   acua u
                    ||| ||||      |||||||     |||||||                |||||| |||||| |||||||||||||                   |||| a
                    ggu aaug      gaaauaa     caacaua                uAUUCU UAACCU CUUUGAUUUgucu                   ugau a
cuguacagacaaaaccagga   u    aaucuu       aaacg       ucaaaucuucaaccuc      A      C             uuuucuuauaaagcuagaa    a 

Annotation confidence Not enough data

Genome context

JH999163.1: 326415-326598 [+]

Mature csi-miR2275b-5p

• Accession: MIMAT0048952
• Description: Citrus sinensis csi-miR2275b-5p mature miRNA
• Sequence: 31 - AGAAUUGGAUGGAACUAAACA - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR2275b-3p

• Accession: MIMAT0048953
• Description: Citrus sinensis csi-miR2275b-3p mature miRNA
• Sequence: 93 - UUUAGUUUCCUCCAAUAUCUUA - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113