miRBase entry: csi-MIR3627a

Stem-loop csi-MIR3627a

Accession

MI0039680

Description

Citrus sinensis csi-MIR3627a precursor miRNA

Sequence

gcaggagagagaggggggcuacagggauucUUGUCGCCGGAGAGAUAGCACCuacuaccucuuaauugcauuaacuaaguugugcauaaauaacgccguaagcgccaucucccggugacaagacucccuucauccucuauauauauauaucaa
...((((.((((((((((..........((((((((((((.(((((.((.(.(((...........(((((.(((...))))))))...........))).).)).))))))))))))))))))))))))).))))))...............

Structure

------------gca    a  -        cuacagggau            A     A  A C   uaccucuuaau     u   u 
               ggag ga gagggggg          ucUUGUCGCCGG GAGAU GC C uac           ugcau aac  
               |||| || ||||||||          |||||||||||| ||||| || | |||           ||||| ||| a
               ucuc cu cuucccuc          agaacaguggcc cucua cg g aug           acgug uug  
aacuauauauauaua    -  a        ----------            -     c  c a   ccgcaauaaau     -   a

Annotation confidence Not enough data

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Genome context

chr6: 19940722-19940874 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from csi-MIR3627a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature csi-miR3627a-5p

Accession	MIMAT0048954
Description	Citrus sinensis csi-miR3627a-5p mature miRNA
Sequence	31 - UUGUCGCCGGAGAGAUAGCACC - 52
Evidence	experimental Illumina [1]

References

PubMed ID: 28054378
MicroRNA annotation of plant genomes - Do it right or not at all
"Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
Bioessays (2017) 39:1600113