Stem-loop csi-MIR3627b

Accession

MI0039681

Description

Citrus sinensis csi-MIR3627b precursor miRNA

Sequence

gggucauaagcaggagacauacgcaacaacgacagagcuuaauuagcacaaaagugaggaaaaauuauaaaggaaaguaaucgaagccaagccaaggccugcaugaauuuuaaggcaagcacaugcuagaaaaagaaauuaaaagaaguucaggggcucUUGUCGCAGGAGCGUUGGCACCugcaccggccaccguguguauguggugucgcaagugccagcauccugugacaagaagcccuaaaacuucuucgcucacauuuuu
.((((....(((((.(.(..((((..(..(((((((((((......(((....))).......(((((........)))))....(((.......)))(((.((...((((((((((......))))...........))))))...)).))))))))).)))))..)..))))..)).)))))...))))...(((((...(((((((((((.(((....)))..)))))))(((((........))))))))).)))))....

Structure

-------------------------------------------------------------------------g    auaa     a a au    aa aa     -      aauuagcacaaaagugaggaaaaauuauaaaggaaaguaaucgaagccaagccaa 
                                                                          gguc    gcagg g c  acgc  c  cgaca gagcuu                                                       g
                                                                          ||||    ||||| | |  ||||  |  ||||| ||||||                                                       g
                                                                          ccgg    cguCC C G  UGCG  G  GCUGU cucggg                                                       c
uuuuuacacucgcuucuucaaaaucccgaagaacaguguccuacgaccgugaacgcugugguguaugugugcca    -cca     A - GU    AG AC     U      gacuugaagaaaauuaaagaaaaagaucguacacgaacggaauuuuaaguacguc 

Annotation confidence Not enough data

Genome context

chr6: 19944464-19944728 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csi-MIR3627b

Mature csi-miR3627b-3p

• Accession: MIMAT0048955
• Description: Citrus sinensis csi-miR3627b-3p mature miRNA
• Sequence: 160 - UUGUCGCAGGAGCGUUGGCACC - 181
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113