miRBase entry: csi-MIR3627c

Stem-loop csi-MIR3627c


Accession
MI0039682
Description
Citrus sinensis csi-MIR3627c precursor miRNA


Sequence

aauuaaauauagaaaguuggggcacuuauaUCGCAGGGGAGAUGGGACCAACugcagccgcuagguagcagccggugccauccuccugcgauaugagaacccuccaacuuacucuuguccaaa
..........((.(((((((((..(((((((((((((((.(((((.(((..((((.(((....))).))))..))).))))))))))))))))))))....))))))))).))..........

Structure
aauuaaauau  a         --ca               A     G   AA    a   g 
          ag aaguugggg    cuuauaUCGCAGGGG GAUGG ACC  Cugc gcc c
          || |||||||||    ||||||||||||||| ||||| |||  |||| |||  
          uc uucaaccuc    gaguauagcguccuc cuacc ugg  gacg ugg u
aaaccuguuc  a         ccaa               -     g   cc    a   a 


Annotation confidence Not enough data
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Genome context
chr6: 19939025-19939147 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from csi-MIR3627c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csi-miR3627c-5p

Accession MIMAT0048956
Description Citrus sinensis csi-miR3627c-5p mature miRNA
Sequence 31 - UCGCAGGGGAGAUGGGACCAAC - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113