Stem-loop csi-MIR3952b

Accession

MI0039685

Description

Citrus sinensis csi-MIR3952b precursor miRNA

Sequence

uuaaacaaacuuaugcauauucuuucauguGCUGUAGAAAGGCCCCUCAACcucggaaaccucaccauggacugggaacgaagaaagugggaucugaugguuggcauugaagguggcaagcugcagaagaaagauggcguuuucaaaguUGAAGGGCCUUUCUAGAGCACuggaauccauucauaauuuagcuugaaauc
..........(((((.......(((((.(((((.(((((((((((.(((((...((((((.(((((((...((........))...))))..((((..(.(((.((((...)))).))).)..)))).......))).))))))...))))).))))))))))).))))))))))......)))))..............

Structure

----uuaaacaaac     cauauuc     u     G           C     cuc      c   ccauggacugggaacgaagaaaguggga    au g   g    g 
              uuaug       uuuca guGCU UAGAAAGGCCC UCAAC   ggaaac uca                            ucug  g uug cauu  
              |||||       ||||| ||||| ||||||||||| |||||   |||||| |||                            ||||  | ||| |||| a
              aauac       aaggu CACGA AUCUUUCCGGG AGUug   cuuuug ggu                            agac  c aac gugg  
cuaaaguucgauuu     -uuaccu     -     G           A     aaa      c   ---------------------agaaaga    gu g   g    a 

Annotation confidence Not enough data

Genome context

chr8: 15996993-15997192 [+]

Mature csi-miR3952b-5p

• Accession: MIMAT0048961
• Description: Citrus sinensis csi-miR3952b-5p mature miRNA
• Sequence: 31 - GCUGUAGAAAGGCCCCUCAAC - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR3952b-3p

• Accession: MIMAT0048962
• Description: Citrus sinensis csi-miR3952b-3p mature miRNA
• Sequence: 150 - UGAAGGGCCUUUCUAGAGCAC - 170
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113