miRBase entry: csi-MIR3954b

Stem-loop csi-MIR3954b


Accession
MI0039686
Description
Citrus sinensis csi-MIR3954b precursor miRNA


Sequence

uauuauuuugcuuugguuuggucuguuuacaaagugagaaaaucacuuucguuguucguuguuagaaaaaaauaugaucaauuauauuuguUUGGACAGAGAAAUCACGGUCAugagaugaguuuucuaaucuguacuguaaucuguauacggugauggugaauauugacgauggauucucuuucuACCGUGUUUCUCUGCCCAAUCagauauauuugaucuucauuccauuucugu
.............(((..(((.......(((((((((.....))))))).))..(((.......)))........((((((.((((((((.((((.((((((((.((((((...((((.(((..(((..(((..(((((((.......)))))))..))).............)))..))))))).)))))))))))))).)))).)))))))).)))))).)))..))).......

Structure
uauuauuuugcuu   uu   ucuguuuacaaagugagaaaaucacuuucguuguucguuguuagaaaaaaauau      u        u    A        U      CAu    u   uu   -----------ua   ug       au 
             ugg  ugg                                                      gaucaa uauauuug UUGG CAGAGAAA CACGGU   gaga gag  uuc             auc  uacugua  c
             |||  |||                                                      |||||| |||||||| |||| |||||||| ||||||   |||| |||  |||             |||  |||||||  u
             acc  acu                                                      cuaguu auauagaC AACC GUCUCUUU GUGCCA   cuuu cuc  agg             ugg  guggcau  g
------ugucuuu   uu   -----------------------------------------------------u      u        U    C        -      --u    -   uu   uagcaguuauaag   ua       au 


Annotation confidence Not enough data
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Genome context
chr9: 5824724-5824960 [-]

Database links

Mature csi-miR3954b-5p

Accession MIMAT0048963
Description Citrus sinensis csi-miR3954b-5p mature miRNA
Sequence 92 - UUGGACAGAGAAAUCACGGUCA - 113
Evidence experimental
Illumina [1]

Mature csi-miR3954b-3p

Accession MIMAT0048964
Description Citrus sinensis csi-miR3954b-3p mature miRNA
Sequence 187 - ACCGUGUUUCUCUGCCCAAUC - 207
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113