miRBase entry: csi-MIR9560

Stem-loop csi-MIR9560


Accession
MI0039696
Description
Citrus sinensis csi-MIR9560 precursor miRNA


Sequence

caaggugugauucugaaugcACAGGAGGUGGAACAAAUAUGAAAuuuucauugaaauUCAUAUUUGCUCCACCACCUGUGGauucaaauucagccuuagagau
.(((((.(((...(((((.((((((.((((((.((((((((((.(((.....))).)))))))))).)))))).)))))).)))))...))))))))......

Structure
-----c     g   uuc     g      A      A          A   u 
      aaggu uga   ugaau cACAGG GGUGGA CAAAUAUGAA uuu c
      ||||| |||   ||||| |||||| |||||| |||||||||| ||| a
      uuccg acu   acuua GUGUCC CCACCU GUUUAUACUu aag u
uagaga     -   uaa     G      A      C          a   u 


Annotation confidence Not enough data
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Genome context
chr3: 18990552-18990654 [-]

Database links

Mature csi-miR9560-5p

Accession MIMAT0048979
Description Citrus sinensis csi-miR9560-5p mature miRNA
Sequence 21 - ACAGGAGGUGGAACAAAUAUGAAA - 44
Evidence experimental
Illumina [1]

Mature csi-miR9560-3p

Accession MIMAT0048980
Description Citrus sinensis csi-miR9560-3p mature miRNA
Sequence 58 - UCAUAUUUGCUCCACCACCUGUGG - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113