miRBase entry: csi-MIR156j

Stem-loop csi-MIR156j


Accession
MI0039703
Description
Citrus sinensis csi-MIR156j precursor miRNA

Literature search
7 open access papers mention csi-MIR156j
(36 sentences)

Sequence

gugaaaggcugacacucAGCUGCUGACUCGUUGGUUCAagagcucaucaauggaaaauguagaaucaugauguguuucugAUCCAACGAAGCAGGAGCUGCguuuagucaug
......((((((.((.(((((.(((..(((((((.(((.((((.(((((.((.............))))))).)))).))).)))))))..))).))))).))))))))...

Structure
gugaaa      c  u     G   AC       U   a    u     a  gaaaa 
      ggcuga ac cAGCU CUG  UCGUUGG UCA gagc cauca ug     u
      |||||| || ||||| |||  ||||||| ||| |||| ||||| ||     g
      cugauu ug GUCGA GAC  AGCAACC Agu uuug guagu ac     u
---gua      -  C     G   GA       U   c    u     -  uaaga 


Annotation confidence Not enough data
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Genome context
chr2: 10333819-10333930 [+]

Database links

Mature csi-miR156j-5p

Accession MIMAT0048991
Description Citrus sinensis csi-miR156j-5p mature miRNA
Sequence 18 - AGCUGCUGACUCGUUGGUUCA - 38
Evidence experimental
Illumina [1]

Mature csi-miR156j-3p

Accession MIMAT0048992
Description Citrus sinensis csi-miR156j-3p mature miRNA
Sequence 81 - AUCCAACGAAGCAGGAGCUGC - 101
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113