miRBase entry: csi-MIR3951b

Stem-loop csi-MIR3951b


Accession
MI0039712
Description
Citrus sinensis csi-MIR3951b precursor miRNA

Literature search
1 open access papers mention csi-MIR3951b
(3 sentences)

Sequence

cuuggcaCAGGUAAAGAUGAGAGAAAAAcaucagagaagagagaaauguggucccucucuauccacccacccauuagucucucguuucuuuucuucuuUUUCUCUUAUCUUUUAUCUGUGcuuagc
((.(((((((((((((((((((((((((....((((((((((((...((((...................))))...))))))..)))))).....))))))))))))).)))))))))))).)).

Structure
-  u            -             -cauc      --      aau    ucccucuc 
 cu ggcaCAGGUAAA GAUGAGAGAAAAA     agagaa  gagaga   gugg        u
 || |||||||||||| |||||||||||||     ||||||  ||||||   ||||        a
 ga ucGUGUCUAUUU CUAUUCUCUUUuu     uuucuu  cucucu   uacc        u
c  u            U             cuucu      ug      gau    cacccacc 


Annotation confidence Not enough data
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Genome context
chr4: 7871758-7871883 [-]

Database links

Mature csi-miR3951b-5p

Accession MIMAT0049003
Description Citrus sinensis csi-miR3951b-5p mature miRNA
Sequence 8 - CAGGUAAAGAUGAGAGAAAAA - 28
Evidence experimental
Illumina [1]

Mature csi-miR3951b-3p

Accession MIMAT0049004
Description Citrus sinensis csi-miR3951b-3p mature miRNA
Sequence 99 - UUUCUCUUAUCUUUUAUCUGUG - 120
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113