miRBase entry: aof-MIR12144

Stem-loop aof-MIR12144


Accession
MI0040521
Description
Asparagus officinalis aof-MIR12144 precursor miRNA


Sequence

gaucaccugcUUCACGGCGUUCUCGAACUCCucaacacgagcuuguagggacaaggaaucugaggaaacagacucuugacccggagugagugccgugauggguggaa
...(((((...((((((((..(((..(((((...(((......))).(((.(((((..((((......)))).))))).))))))))))))))))))).)))))...

Structure
gau     gcU        UU   GA     ucaacacgagcuugua   a     aa    ag 
   caccu   UCACGGCG  CUC  ACUCC                ggg caagg  ucug  g
   |||||   ||||||||  |||  |||||                ||| |||||  ||||   
   guggg   agugccgu  gag  ugagg                ccc guucu  agac  a
aag     --u        --   --     ----------------   a     -c    aa 


Annotation confidence Not enough data
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Genome context
chr4: 88136579-88136685 [-]

Database links

Mature aof-miR12144

Accession MIMAT0049727
Description Asparagus officinalis aof-miR12144 mature miRNA
Sequence 11 - UUCACGGCGUUCUCGAACUCC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279