Stem-loop aof-MIR12145

Accession

MI0040522

Description

Asparagus officinalis aof-MIR12145 precursor miRNA

Sequence

ggaaacaagaAGAGAAGUCGGUCUAAAUGCUCaaaaaagcuuaugucaguaguuucauuggaaaugucauguuuguaauuguaauuguuuauauaccugucaauaguuuacuuugacuuacuggaaauaaaguuuguuuuuugggauauuuucuaugugugucuc
...........((((...((....((((((((((((((((((((.(((((((..(((..(..((((.((.((.(((((..........))))).)).)).))....))..)..))).)))))))..)).))))...))))))))).)))))....))....))))

Structure

ggaaacaagaA    -AGU  GUCU     -         ---    -  -g       uu   uu ga  ----  u  u  u     uugu 
           GAGA    CG    AAAUG CUCaaaaaa   gcuu au  ucaguag  uca  g  aa    ug ca gu uguaa    a
           ||||    ||    ||||| |||||||||   |||| ||  |||||||  |||  |  ||    || || || |||||     
           cucu    gu    uuuau ggguuuuuu   ugaa ua  ggucauu  agu  c  uu    ac gu ca auauu    a
-----------    gugu  aucu     a         guu    a  aa       -c   uu au  gaua  u  c  u     uguu 

Annotation confidence Not enough data

Genome context

chr2: 77580163-77580327 [+]

Mature aof-miR12145

• Accession: MIMAT0049728
• Description: Asparagus officinalis aof-miR12145 mature miRNA
• Sequence: 11 - AGAGAAGUCGGUCUAAAUGCUC - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279