Stem-loop aof-MIR12150

Accession

MI0040527

Description

Asparagus officinalis aof-MIR12150 precursor miRNA

Sequence

auugaauuuaUUAACAGCAUUGUCGAAAAGCggucgauaacaauuucagaaggagauugugcaaaauauagagcaaaguuuugugcaacucucuuguaugcacgcgauucaccuuuuuuguaaauauuauuuaaauuuucaccaugguguuuguuuuguaugcaauauguggaugauauuauguggaugauauuauguggacgauacccucauuugauauuaugugguugauauuuuguaa
....((..(((((((.(((((((((((.((.(((((...((..........((((((((((((((((..........))))))))))).)))))((((((((.((((..((((.....((.((((.........)))).))....)))).))))..))))))))........((((((((((....))))))))))))...)))..))))..)))))))..)))).)))))))..))....

Structure

auug  uu       A    --       -A  C  --   aua  aauuucagaaggagauugugcaaaauauagagcaaaguuuugugcaacucucu        -c    uu    uuuuu  u    auu 
    aa  uaUUAAC GCAU  UGUCGAA  AG gg  ucg   ac                                                     uguaugca  gcga  cacc     ug aaau   a
    ||  ||||||| ||||  |||||||  || ||  |||   ||                                                     ||||||||  ||||  ||||     || ||||   u
    uu  auaguug ugua  auaguuu  uc cc  agc   ug                                                     acguaugu  uguu  gugg     ac uuua   u
aaug  uu       g    uu       ac  -  au   agg  ---------------------uauuauaguagguguauuauaguagguguaua        uu    -u    -uacc  u    aau 

Annotation confidence Not enough data

Genome context

chr3: 97928475-97928715 [-]

Mature aof-miR12150

• Accession: MIMAT0049733
• Description: Asparagus officinalis aof-miR12150 mature miRNA
• Sequence: 11 - UUAACAGCAUUGUCGAAAAGC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279