miRBase entry: aof-MIR12156

Stem-loop aof-MIR12156


Accession
MI0040533
Description
Asparagus officinalis aof-MIR12156 precursor miRNA


Sequence

cacucagguuCUCUGUAGAUGUCGCGAUGGAggaaugagccaauuaggaagcuuucccugaugucaauaucggggaguucgacgaacauucccucgaucaagugacgagcuucucuaaggcugaccauagauugcuugcugauaugcuaucggaguaagcacaucgugaggcuacaggaccaacuauugaggu
..((((((((.(((((((.(.((((((((..((..(.((((..(((((((((((........((((..((((((((((((...))))..)))).))))....))))))))))).)))))))).)))......((((((((((((...))))..)))))))))))))))).))))))))...))))..))))..

Structure
ca    --    --C       A G        ---------------------------------GA  aa g    aa    -       ucccugau    --au    -    --    g 
  cuca  gguu   UCUGUAG U UCGCGAUG                                   gg  u agcc  uuag gaagcuu        guca    aucg ggga  guuc  
  ||||  ||||   ||||||| | ||||||||                                   ||  | ||||  |||| |||||||        ||||    |||| ||||  |||| a
  gagu  ucaa   ggacauc g agugcuac                                   cc  a ucgg  aauc cuucgag        cagu    uagc cccu  caag  
ug    ua    cca       - g        acgaaugaggcuaucguauagucguucguuagaua  -- g    --    u       --------    gaac    u    ua    c 


Annotation confidence Not enough data
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Genome context
chr4: 75449530-75449722 [+]

Database links

Mature aof-miR12156

Accession MIMAT0049739
Description Asparagus officinalis aof-miR12156 mature miRNA
Sequence 11 - CUCUGUAGAUGUCGCGAUGGA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279