miRBase entry: aof-MIR12158

Stem-loop aof-MIR12158


Accession
MI0040535
Description
Asparagus officinalis aof-MIR12158 precursor miRNA


Sequence

uagaaaaguaUUGGUAUCUGGAUUGUAUAGCucuauuaauccagugaagugaagaacauucaccggcaaucuguauuggguagcaugaauagcuucguacaauccuaucgccuucaauucaa
............(((....(((((((((((((.(((..((((((((..(((((.....)))))..........))))))))...)))...))))..)))))))))....)))..........

Structure
uagaaaaguaUU   AUCU         --    --c   -ua        --------aa     g 
            GGU    GGAUUGUAU  AGCu   uau   auccagug          gugaa a
            |||    |||||||||  ||||   |||   ||||||||          ||||| a
            ccg    ccuaacaug  ucga   gua   uggguuau          cacuu c
--aacuuaacuu   cuau         cu    uaa   cga        gucuaacggc     a 


Annotation confidence Not enough data
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Genome context
chr6: 26208580-26208701 [-]

Database links

Mature aof-miR12158

Accession MIMAT0049741
Description Asparagus officinalis aof-miR12158 mature miRNA
Sequence 11 - UUGGUAUCUGGAUUGUAUAGC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279