miRBase entry: aof-MIR12162

Stem-loop aof-MIR12162


Accession
MI0040539
Description
Asparagus officinalis aof-MIR12162 precursor miRNA


Sequence

cugauaugguUUUAGUCUGAUUUAGUAAAAUaaagcacuugaagcuuucauuaaucuugauccaucagauuuucuuguuaaauuuguuaaagcacauuugaauuugucaucaguuguucaagaucgaguguucuguuguuaaauucaaacaugcaacgauaucau
.((((((.(((.((((.((((((((...((((.(((((((((............((((((..((.(.(((.......((((((.(((....))).)))))).......))).).)).))))))))))))))).)))).))))).))).)).)).))).)))))).

Structure
c      g   U  -  C   -     UAA    a         agcuuucauuaa      uc  u a   uuucuug      u   u 
 ugauau guU UA GU UGA UUUAG   AAUa agcacuuga            ucuuga  ca c gau       uuaaau ugu a
 |||||| ||| || || ||| |||||   |||| |||||||||            ||||||  || | |||       |||||| |||  
 acuaua caa gu ca acu aaauu   uugu uugugagcu            agaacu  gu g cua       aguuua acg a
u      g   c  a  a   u     --g    c         ------------      -u  u a   cuguuua      c   a 


Annotation confidence Not enough data
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Genome context
chr2: 81754789-81754953 [-]

Database links

Mature aof-miR12162

Accession MIMAT0049745
Description Asparagus officinalis aof-miR12162 mature miRNA
Sequence 11 - UUUAGUCUGAUUUAGUAAAAU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279