miRBase entry: aof-MIR12171

Stem-loop aof-MIR12171


Accession
MI0040550
Description
Asparagus officinalis aof-MIR12171 precursor miRNA


Sequence

uuugcucucaUCCUUGUAGAUGAGUUGUGCAaggguggucuuucccauuccucugugucucauuauguggaaacgaguguguuaauguugcuuucuuccucaucugcaacgggcgucauccgaggaaagugcaccagauguuaugcgcacaaauuaugagggugguaagguaacaucucucuuguuccauaaugggccucagaggaauggggaaaacauccuugcacaacuugucuauaaaaugagagcaca
..(((((((((..((((((((((((((((((((((((...(((((((((((((((.(.(((((..(((((((.((((.(.(...(((((((((((((((((((.......(.((((((((...((........)).))))..)))).).......))))))).)).))))))))))).).)))))))))))))))).).)))))))))))))))..)))))))))))))))))))))))).)))))))))..

Structure
uu         CC                        guc               u u     ua       a    u u uua          -  -       cugcaac g    --    cga  aaa 
  ugcucucaU  UUGUAGAUGAGUUGUGCAagggug   uuucccauuccucug g cucau  uguggaa cgag g g   auguugcuuu cu uccucau       g gcgu  cauc   gg   g
  |||||||||  ||||||||||||||||||||||||   ||||||||||||||| | |||||  ||||||| |||| | |   |||||||||| || |||||||       | ||||  ||||   ||    
  acgagagua  aauaucuguucaacacguuccuac   aagggguaaggagac c gggua  auaccuu guuc c c   uacaauggaa gg gggagua       c cgua  guag   cc   u
ac         -a                        -aa               u c     --       -    u u ---          u  u       uuaaaca g    uu    --a  acg 


Annotation confidence Not enough data
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Genome context
chr9: 67696405-67696656 [-]

Database links

Mature aof-miR12171

Accession MIMAT0049756
Description Asparagus officinalis aof-miR12171 mature miRNA
Sequence 11 - UCCUUGUAGAUGAGUUGUGCA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279