miRBase entry: aof-MIR12173

Stem-loop aof-MIR12173


Accession
MI0040553
Description
Asparagus officinalis aof-MIR12173 precursor miRNA


Sequence

agcccguauuUAUGAAUUUCCGCUGUAGUUUuggggcgugacagaaagaugguaucagagcugaggcuauagguccuaaauuauuuuggagaugguuaagaaauggaaa
...((((.((((...(((((((..(((((((.(((((.(.........(((((.(((....))).)))))).))))))))))))..)))))))...))))..))))...

Structure
agc    -a    UGA       CU       u     g gacagaaag     a   g 
   ccgu  uuUA   AUUUCCG  GUAGUUU ggggc u         auggu uca a
   ||||  ||||   |||||||  ||||||| ||||| |         ||||| |||  
   ggua  gaau   uagaggu  uauuaaa uccug a         uaucg agu g
aaa    aa    ugg       uu       -     g ---------     g   c 


Annotation confidence Not enough data
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Genome context
chr2: 59690252-59690360 [+]

Database links

Mature aof-miR12173

Accession MIMAT0049759
Description Asparagus officinalis aof-miR12173 mature miRNA
Sequence 11 - UAUGAAUUUCCGCUGUAGUUU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279