Stem-loop aof-MIR12174

Accession

MI0040555

Description

Asparagus officinalis aof-MIR12174 precursor miRNA

Sequence

gcuacucuagCGUUUUCUUGGAUUGAUAGAGAcucaugggcuaaauugugcacuuauuaugauucagaggacaagaagguguauaguuuaaacuaaauuaauuguuuaguagguaauuaauuuuucuuuuguuugauuucaaaucuaaauauaauacuaacaugcaggagaacgcaagacguaaugugca
((((((((.(((((((((((.((.(.(((.......(((..((((((((((((((.((.((.(((...))))).))))))))))))))))..))).......(((((((...(.((((((............)))))).)....))))))).....))).))).))))))))))).))).)))....)).

Structure

-  ----   -   a           G  U A   ------------------------------------------------------AGAcuca   gc              a  a  a   a 
 gc    uac ucu gCGUUUUCUUG AU G UAG                                                             ugg  uaaauugugcacuu uu ug uuc  
 ||    ||| ||| ||||||||||| || | |||                                                             |||  |||||||||||||| || || ||| g
 cg    aug aga cgcaagaggac ua c auc                                                             auc  auuugauaugugga ag ac agg  
a  ugua   c   a           g  - a   auaauauaaaucuaaacuuuaguuuguuuucuuuuuaauuaauggaugauuuguuaauuaa   aa              -  a  -   a 

Annotation confidence Not enough data

Genome context

chr8: 35868195-35868384 [-]

Mature aof-miR12174

• Accession: MIMAT0049761
• Description: Asparagus officinalis aof-miR12174 mature miRNA
• Sequence: 11 - CGUUUUCUUGGAUUGAUAGAGA - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279