miRBase entry: aof-MIR171b

Stem-loop aof-MIR171b


Accession
MI0040580
Description
Asparagus officinalis aof-MIR171b precursor miRNA

Literature search
2 open access papers mention aof-MIR171b
(6 sentences)

Sequence

cgcgguggaugauuaaaagaagcgauauuggugagguucaauccgaugauugaauuuacacgacgaugguagaacugucucagaUUGAGCCGCGCCAAUAUCACUucccuccauu
...((((((.(.......((((.((((((((((.(((((((((.((.(((....(((((.(......))))))...))))).))))))))).)))))))))).))))).))))))

Structure
cgc      u auuaaaa    c          a         c  u   ugaa     a ga 
   ggugga g       gaag gauauuggug gguucaauc ga gau    uuuac c  c
   |||||| |       |||| |||||||||| ||||||||| || |||    ||||| |   
   uuaccu c       cuUC CUAUAACCGC CCGAGUUag cu cug    agaug g  g
---      c -------    A          G         a  -   -uca     - ua 


Annotation confidence Not enough data
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Genome context
chr5: 123303160-123303274 [-]

Database links

Mature aof-miR171b

Accession MIMAT0049786
Description Asparagus officinalis aof-miR171b mature miRNA
Sequence 85 - UUGAGCCGCGCCAAUAUCACU - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279