miRBase entry: aof-MIR2118b

Stem-loop aof-MIR2118b


Accession
MI0040583
Description
Asparagus officinalis aof-MIR2118b precursor miRNA


Sequence

auaagagcuauggaaauggaaggauggggaaguucuguuuccaauuuucuuuuaucaaguccauaacuugaugagaaauggguuacagaguacUUCCCGAAGCCUCCCAUUUCUAugguucuugc
.((((((((((((((((((.(((...((((((((((((..((...((((((..(((((((.....)))))))))))))..))..)))))..)))))))....))).)))))))))))))))))).

Structure
a                  a   -aug       --     uu  aau      uu       c 
 uaagagcuauggaaaugg agg    gggaagu  ucugu  cc   uuucuu  aucaagu c
 |||||||||||||||||| |||    |||||||  |||||  ||   ||||||  ||||||| a
 guucuugguAUCUUUACC UCC    CCCUUca  agaca  gg   aaagag  uaguuca u
c                  C   GAAG       ug     uu  -gu      --       a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 113067181-113067305 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aof-MIR2118b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aof-miR2118b

Accession MIMAT0049789
Description Asparagus officinalis aof-miR2118b mature miRNA
Sequence 94 - UUCCCGAAGCCUCCCAUUUCUA - 115
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279