miRBase entry: aof-MIR2118c

Stem-loop aof-MIR2118c


Accession
MI0040584
Description
Asparagus officinalis aof-MIR2118c precursor miRNA

Literature search
1 open access papers mention aof-MIR2118c
(1 sentences)

Sequence

cuaagagcugcaggauugggagugucgagagaaaaauacuauuuccuaacucugucaauaauggucgagauggguaauugguuaUUUCCGAUGCCACCCAAUCCUUugguucuuau
.(((((((((.(((((((((.((((((.((((.....((((.((((((.(((..(((....)))..))).)))).)).))))..))))))))))..))))))))).))))))))).

Structure
c         c         -a      a    aaaau    u  -    a   ug   a 
 uaagagcug aggauuggg  gugucg gaga     acua uu ccua cuc  uca u
 ||||||||| |||||||||  |||||| ||||     |||| || |||| |||  |||  
 auucuuggu UCCUAACCC  CGUAGC CUUU     uggu aa gggu gag  ggu a
u         U         AC      -    ---au    u  u    a   cu   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 113061987-113062102 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aof-MIR2118c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aof-miR2118c

Accession MIMAT0049790
Description Asparagus officinalis aof-miR2118c mature miRNA
Sequence 85 - UUUCCGAUGCCACCCAAUCCUU - 106
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279