miRBase entry: aof-MIR2118a

Stem-loop aof-MIR2118a


Accession
MI0040585
Description
Asparagus officinalis aof-MIR2118a precursor miRNA

Literature search
1 open access papers mention aof-MIR2118a
(1 sentences)

Sequence

gaagaacgcgcuucuaagagcgagaggauugggguugucgaggaaacaaccgaguccuaacucugccaauauuggucgagaugggaaacuuguuauCUCCCGAUGCCACCUAAUCCUUugguucuuaagggcuucuuccucuu
((((((.((.((..(((((((.((((((((((((.(((((.((((((((.....(((((.(((.((((....)))).))).)))))...)))))...)))))))).).))))))))))).))))))))).)))))))).....

Structure
-----      c  g  uc       g           - u     a   ---     ccgag     a   u    a 
     gaagaa gc cu  uaagagc agaggauuggg g ugucg gga   aacaa     uccua cuc gcca u
     |||||| || ||  ||||||| ||||||||||| | ||||| |||   |||||     ||||| ||| ||||  
     cuucuu cg ga  auucuug uUUCCUAAUCC C GUAGC CCU   uuguu     agggu gag uggu a
uucuc      -  g  --       g           A C     -   Cua     --caa     a   c    u 


Annotation confidence Not enough data
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Genome context
chr1: 113059877-113060019 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aof-MIR2118a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aof-miR2118a

Accession MIMAT0049791
Description Asparagus officinalis aof-miR2118a mature miRNA
Sequence 97 - CUCCCGAUGCCACCUAAUCCUU - 118
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279